STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN02949497_0758Di-haem cytochrome c peroxidase. (448 aa)    
Predicted Functional Partners:
SAMN02949497_0757
Uncharacterized protein.
 
     0.817
SAMN02949497_1880
Cytochrome c, mono-and diheme variants.
 
 
 0.797
SAMN02949497_1883
Protein NirF.
 
 
 
 0.756
SAMN02949497_3718
Selenium-binding protein 1.
   
 
 0.731
SAMN02949497_1595
REJ domain-containing protein.
   
 
 0.725
SAMN02949497_1879
40-residue YVTN family beta-propeller repeat-containing protein.
   
 
 0.725
SAMN02949497_3595
PQQ-dependent catabolism-associated beta-propeller protein.
   
 
 0.725
nuoC
NADH-quinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
   
 
  0.720
SAMN02949497_1839
Di-haem cytochrome c peroxidase.
  
   
 0.698
SAMN02949497_0826
[NiFe] hydrogenase diaphorase moiety large subunit.
   
 
  0.665
Your Current Organism:
Methylomagnum ishizawai
NCBI taxonomy Id: 1760988
Other names: DSM 29768, JCM 18894, KCTC 4681, M. ishizawai, Methylocaldum sp. 175, Methylomagnum ishizawai Khalifa et al. 2015 emend. Frindte et al. 2017, NBRC 109438, strain RS11D-Pr
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