STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN02949497_1242Uncharacterized protein. (161 aa)    
Predicted Functional Partners:
SAMN02949497_1241
Phage terminase large subunit (GpA).
  
    0.856
SAMN02949497_1243
Uncharacterized protein.
       0.797
SAMN02949497_1244
Uncharacterized protein.
       0.741
SAMN02949497_1245
Uncharacterized protein.
       0.741
SAMN02949497_1246
DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family.
       0.741
SAMN02949497_1247
DNA-binding protein H-NS.
       0.741
SAMN02949497_1240
Uncharacterized protein.
       0.727
SAMN02949497_3432
Phage uncharacterized protein (Putative large terminase), C-terminal domain-containing protein.
  
  
 0.670
SAMN02949497_2977
Site-specific DNA-methyltransferase (adenine-specific).
  
    0.571
SAMN02949497_1248
Uncharacterized protein.
       0.547
Your Current Organism:
Methylomagnum ishizawai
NCBI taxonomy Id: 1760988
Other names: DSM 29768, JCM 18894, KCTC 4681, M. ishizawai, Methylocaldum sp. 175, Methylomagnum ishizawai Khalifa et al. 2015 emend. Frindte et al. 2017, NBRC 109438, strain RS11D-Pr
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.