STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN02949497_1331TIGR02099 family protein. (1303 aa)    
Predicted Functional Partners:
SAMN02949497_1330
Nitrilase.
     0.851
SAMN02949497_1332
Ribonuclease G.
       0.813
SAMN02949497_1360
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
 
     0.706
bamE
Outer membrane protein assembly factor BamE; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.704
SAMN02949497_1329
TldD protein.
 
   
 0.703
SAMN02949497_1279
Methyltransferase domain-containing protein.
  
     0.691
SAMN02949497_0804
Negative regulator of RcsB-dependent stress response.
  
     0.678
lptE
LPS-assembly lipoprotein LptE; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.
 
     0.670
ftsL
Cell division protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.667
SAMN02949497_4581
Uroporphyrin-3 C-methyltransferase.
  
     0.665
Your Current Organism:
Methylomagnum ishizawai
NCBI taxonomy Id: 1760988
Other names: DSM 29768, JCM 18894, KCTC 4681, M. ishizawai, Methylocaldum sp. 175, Methylomagnum ishizawai Khalifa et al. 2015 emend. Frindte et al. 2017, NBRC 109438, strain RS11D-Pr
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