STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN02949497_1337Endonuclease, Uma2 family (Restriction endonuclease fold). (197 aa)    
Predicted Functional Partners:
SAMN02949497_1862
Endonuclease, Uma2 family (Restriction endonuclease fold).
  
     0.768
SAMN02949497_2202
Endonuclease, Uma2 family (Restriction endonuclease fold).
  
     0.766
SAMN02949497_3203
Endonuclease, Uma2 family (Restriction endonuclease fold).
  
     0.658
SAMN02949497_3190
Endonuclease, Uma2 family (Restriction endonuclease fold).
  
     0.635
SAMN02949497_3352
Endonuclease, Uma2 family (Restriction endonuclease fold).
  
     0.553
SAMN02949497_1335
Glycolate oxidase iron-sulfur subunit.
       0.520
SAMN02949497_1336
Glycolate oxidase FAD binding subunit.
       0.520
SAMN02949497_1333
dTTP/UTP pyrophosphatase; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.465
rlmH
Ribosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.465
Your Current Organism:
Methylomagnum ishizawai
NCBI taxonomy Id: 1760988
Other names: DSM 29768, JCM 18894, KCTC 4681, M. ishizawai, Methylocaldum sp. 175, Methylomagnum ishizawai Khalifa et al. 2015 emend. Frindte et al. 2017, NBRC 109438, strain RS11D-Pr
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