STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN02949497_1591Uncharacterized protein. (490 aa)    
Predicted Functional Partners:
SAMN02949497_0644
Phospholipid-binding lipoprotein MlaA.
   
 
 0.909
SAMN02949497_1594
Outer membrane cobalamin receptor protein.
    
 
 0.806
SAMN02949497_3944
FMN-binding domain-containing protein.
 
     0.794
SAMN02949497_1417
WD40 repeat.
   
 
 0.763
SAMN02949497_4308
TPR repeat-containing protein.
   
 
 0.763
SAMN02949497_1804
HZS_alpha domain-containing protein.
   
 
 0.736
tolB
Tol-Pal system protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.736
SAMN02949497_3749
Predicted thiol-disulfide oxidoreductase YuxK, DCC family.
  
     0.687
SAMN02949497_0607
Periplasmic serine endoprotease DegP-like; Belongs to the peptidase S1C family.
    
 
 0.675
SAMN02949497_1162
Trypsin-like peptidase domain-containing protein.
    
 
 0.675
Your Current Organism:
Methylomagnum ishizawai
NCBI taxonomy Id: 1760988
Other names: DSM 29768, JCM 18894, KCTC 4681, M. ishizawai, Methylocaldum sp. 175, Methylomagnum ishizawai Khalifa et al. 2015 emend. Frindte et al. 2017, NBRC 109438, strain RS11D-Pr
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