STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN02949497_1733Phage capsid scaffolding protein (GPO) serine peptidase. (303 aa)    
Predicted Functional Partners:
SAMN02949497_1734
Phage major capsid protein, P2 family.
 
  
 0.989
SAMN02949497_1731
Phage portal protein, PBSX family.
 
    0.983
SAMN02949497_1732
Uncharacterized protein YjcR.
 
    0.983
SAMN02949497_3524
Phage major capsid protein, P2 family.
 
  
 0.968
SAMN02949497_3526
ATPase subunit of terminase (GpP-like).
 
    0.967
SAMN02949497_3529
Phage portal protein, PBSX family.
 
    0.967
SAMN02949497_1736
Phage small terminase subunit.
  
  
 0.943
SAMN02949497_1749
Phage tail tape measure protein, TP901 family, core region.
 
    0.888
SAMN02949497_3522
Phage small terminase subunit.
  
  
 0.863
SAMN02949497_1620
Phage virion morphogenesis (Putative tail completion) protein.
  
    0.809
Your Current Organism:
Methylomagnum ishizawai
NCBI taxonomy Id: 1760988
Other names: DSM 29768, JCM 18894, KCTC 4681, M. ishizawai, Methylocaldum sp. 175, Methylomagnum ishizawai Khalifa et al. 2015 emend. Frindte et al. 2017, NBRC 109438, strain RS11D-Pr
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.