STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN02949497_1819UPF0753 protein SAMN02949497_1819; Belongs to the UPF0753 family. (1085 aa)    
Predicted Functional Partners:
SAMN02949497_1818
NADH-Ubiquinone oxidoreductase (Complex I), chain 5 N-terminus.
 
 0.937
SAMN02949497_1817
NADH dehydrogenase subunit M.
 
     0.829
SAMN02949497_1820
NADH dehydrogenase subunit M.
       0.789
SAMN02949497_1816
NADH-quinone oxidoreductase subunit M.
       0.772
SAMN02949497_2559
Proton-conducting membrane transporter.
 
 
 0.729
SAMN02949497_1815
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
  
    0.728
SAMN02949497_3394
Beta-barrel porin-2, OmpL-like. bbp2.
  
     0.720
SAMN02949497_2201
NADH-quinone oxidoreductase subunit L.
 
 
 0.619
SAMN02949497_1814
Sulfate permease, MFS superfamily.
     0.555
SAMN02949497_3090
Uncharacterized protein.
  
     0.525
Your Current Organism:
Methylomagnum ishizawai
NCBI taxonomy Id: 1760988
Other names: DSM 29768, JCM 18894, KCTC 4681, M. ishizawai, Methylocaldum sp. 175, Methylomagnum ishizawai Khalifa et al. 2015 emend. Frindte et al. 2017, NBRC 109438, strain RS11D-Pr
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