STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN02949497_1838MFS transporter, LPLT family, lysophospholipid transporter. (386 aa)    
Predicted Functional Partners:
SAMN02949497_1837
annotation not available
  
 0.985
SAMN02949497_4611
Amino acid adenylation domain-containing protein.
   
 0.817
SAMN02949497_4450
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
     
 0.758
SAMN02949497_2139
Chorismate mutase.
  
 
 0.757
SAMN02949497_1836
Lysophospholipase, alpha-beta hydrolase superfamily.
    
 0.683
SAMN02949497_0133
MbtH protein.
  
 
 0.673
SAMN02949497_0501
MbtH protein.
  
 
 0.673
SAMN02949497_4275
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
 0.673
SAMN02949497_4281
Flp pilus assembly protein TadD, contains TPR repeats.
  
 
 0.589
SAMN02949497_0135
Amino acid adenylation domain-containing protein.
    
 0.583
Your Current Organism:
Methylomagnum ishizawai
NCBI taxonomy Id: 1760988
Other names: DSM 29768, JCM 18894, KCTC 4681, M. ishizawai, Methylocaldum sp. 175, Methylomagnum ishizawai Khalifa et al. 2015 emend. Frindte et al. 2017, NBRC 109438, strain RS11D-Pr
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