STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN02949497_2930HD-GYP domain, c-di-GMP phosphodiesterase class II (Or its inactivated variant). (413 aa)    
Predicted Functional Partners:
SAMN02949497_0462
Methane/ammonia monooxygenase subunit A.
   
 0.848
SAMN02949497_3109
Methane/ammonia monooxygenase subunit A.
   
 0.848
SAMN02949497_4689
annotation not available
   
 0.848
SAMN02949497_0460
Methane/ammonia monooxygenase subunit C.
   
 0.828
SAMN02949497_1588
Methane/ammonia monooxygenase subunit C.
   
 0.828
SAMN02949497_3110
Methane/ammonia monooxygenase subunit C.
   
 0.828
SAMN02949497_4690
annotation not available
   
 0.828
SAMN02949497_0862
Adenylate cyclase.
 
  
  0.818
SAMN02949497_2772
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
  
 0.803
SAMN02949497_0358
PAS domain S-box-containing protein.
   
 0.759
Your Current Organism:
Methylomagnum ishizawai
NCBI taxonomy Id: 1760988
Other names: DSM 29768, JCM 18894, KCTC 4681, M. ishizawai, Methylocaldum sp. 175, Methylomagnum ishizawai Khalifa et al. 2015 emend. Frindte et al. 2017, NBRC 109438, strain RS11D-Pr
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