STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN02949497_3549BRO family, N-terminal domain. (190 aa)    
Predicted Functional Partners:
SAMN02949497_3542
Prophage antirepressor.
 
     0.873
SAMN02949497_3553
BRO family, N-terminal domain.
 
    
0.831
SAMN02949497_3544
Uncharacterized protein.
       0.780
SAMN02949497_3546
Uncharacterized protein.
       0.778
SAMN02949497_4237
BRO family, N-terminal domain.
  
     0.775
SAMN02949497_3545
Uncharacterized protein.
       0.773
SAMN02949497_3547
Uncharacterized protein.
       0.773
SAMN02949497_3548
Uncharacterized protein.
       0.773
SAMN02949497_3550
Uncharacterized protein.
       0.773
SAMN02949497_3551
Uncharacterized protein.
       0.773
Your Current Organism:
Methylomagnum ishizawai
NCBI taxonomy Id: 1760988
Other names: DSM 29768, JCM 18894, KCTC 4681, M. ishizawai, Methylocaldum sp. 175, Methylomagnum ishizawai Khalifa et al. 2015 emend. Frindte et al. 2017, NBRC 109438, strain RS11D-Pr
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.