STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN02949497_3813Radical SAM superfamily enzyme YgiQ, UPF0313 family. (545 aa)    
Predicted Functional Partners:
SAMN02949497_3816
Glycosyltransferase involved in cell wall bisynthesis.
    
 0.829
SAMN02949497_3817
Glycosyltransferase involved in cell wall bisynthesis.
    
 0.823
SAMN02949497_1560
Polyphosphate kinase 2, PA0141 family.
  
    0.798
SAMN02949497_3812
Radical SAM additional 4Fe4S-binding SPASM domain-containing protein.
 
  
 0.791
SAMN02949497_3814
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.787
SAMN02949497_3815
Methyltransferase, FkbM family.
 
     0.765
SAMN02949497_3810
Nucleoside-diphosphate-sugar epimerase.
 
  
 0.759
SAMN02949497_3807
CDP-glucose 4,6-dehydratase.
    
 0.702
SAMN02949497_3818
Uncharacterized protein.
       0.699
SAMN02949497_3808
CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.667
Your Current Organism:
Methylomagnum ishizawai
NCBI taxonomy Id: 1760988
Other names: DSM 29768, JCM 18894, KCTC 4681, M. ishizawai, Methylocaldum sp. 175, Methylomagnum ishizawai Khalifa et al. 2015 emend. Frindte et al. 2017, NBRC 109438, strain RS11D-Pr
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