STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN02949497_3840Biofilm PGA synthesis lipoprotein PgaB. (645 aa)    
Predicted Functional Partners:
SAMN02949497_3839
Poly-beta-1,6-N-acetyl-D-glucosamine synthase.
 
 
 0.982
SAMN02949497_0063
Glucoamylase.
  
 
 0.878
SAMN02949497_0073
Cyclic beta-1,2-glucan synthetase.
  
 
 0.878
SAMN02949497_0378
Endoglucanase.
    
 0.840
SAMN02949497_3838
Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD.
       0.761
SAMN02949497_1126
4-amino-4-deoxy-L-arabinose transferase.
  
 
 0.675
SAMN02949497_0632
Cellulase (Glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.518
SAMN02949497_2862
Flagellar FliJ protein.
  
     0.499
SAMN02949497_3816
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.490
SAMN02949497_3817
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.490
Your Current Organism:
Methylomagnum ishizawai
NCBI taxonomy Id: 1760988
Other names: DSM 29768, JCM 18894, KCTC 4681, M. ishizawai, Methylocaldum sp. 175, Methylomagnum ishizawai Khalifa et al. 2015 emend. Frindte et al. 2017, NBRC 109438, strain RS11D-Pr
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