SEJ00193.1 protein (Arthrobacter sp. yr096) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEJ00193.1

3-hydroxyisobutyrate dehydrogenase. (301 aa)

Predicted Functional Partners:

SEJ00168.1

0.921

SEJ03511.1

0.820

SEJ74759.1

0.812

SEJ23895.1

0.774

SEJ21798.1

0.770

SEJ23919.1

0.770

SEI79024.1

0.767

SEJ80658.1

0.767

SEJ82902.1

0.767

SEJ39615.1

0.758

Your Current Organism:

Arthrobacter sp. yr096

NCBI taxonomy Id: 1761750
Other names: A. sp. yr096

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEI79024.1	SEJ00193.1	SAMN04487917_102437	SAMN04487917_103283	Aldehyde dehydrogenase (NAD+).	3-hydroxyisobutyrate dehydrogenase.	0.767
SEI79024.1	SEJ03511.1	SAMN04487917_102437	SAMN04487917_103401	Aldehyde dehydrogenase (NAD+).	Acyl-coenzyme A oxidase.	0.645
SEI79024.1	SEJ74759.1	SAMN04487917_102437	SAMN04487917_11214	Aldehyde dehydrogenase (NAD+).	Citrate synthase; Belongs to the citrate synthase family.	0.578
SEI79024.1	SEJ80658.1	SAMN04487917_102437	SAMN04487917_11475	Aldehyde dehydrogenase (NAD+).	Methylmalonate-semialdehyde dehydrogenase [acylating].	0.745
SEI79024.1	SEJ82902.1	SAMN04487917_102437	SAMN04487917_1187	Aldehyde dehydrogenase (NAD+).	Methylmalonate-semialdehyde dehydrogenase [acylating].	0.744
SEJ00168.1	SEJ00193.1	SAMN04487917_103282	SAMN04487917_103283	Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.	3-hydroxyisobutyrate dehydrogenase.	0.921
SEJ00168.1	SEJ03511.1	SAMN04487917_103282	SAMN04487917_103401	Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.	Acyl-coenzyme A oxidase.	0.636
SEJ00168.1	SEJ74759.1	SAMN04487917_103282	SAMN04487917_11214	Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.	Citrate synthase; Belongs to the citrate synthase family.	0.696
SEJ00168.1	SEJ80658.1	SAMN04487917_103282	SAMN04487917_11475	Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.	Methylmalonate-semialdehyde dehydrogenase [acylating].	0.736
SEJ00168.1	SEJ82902.1	SAMN04487917_103282	SAMN04487917_1187	Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.	Methylmalonate-semialdehyde dehydrogenase [acylating].	0.735
SEJ00193.1	SEI79024.1	SAMN04487917_103283	SAMN04487917_102437	3-hydroxyisobutyrate dehydrogenase.	Aldehyde dehydrogenase (NAD+).	0.767
SEJ00193.1	SEJ00168.1	SAMN04487917_103283	SAMN04487917_103282	3-hydroxyisobutyrate dehydrogenase.	Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.	0.921
SEJ00193.1	SEJ03511.1	SAMN04487917_103283	SAMN04487917_103401	3-hydroxyisobutyrate dehydrogenase.	Acyl-coenzyme A oxidase.	0.820
SEJ00193.1	SEJ21798.1	SAMN04487917_103283	SAMN04487917_104280	3-hydroxyisobutyrate dehydrogenase.	Biotin carboxyl carrier protein /biotin carboxylase.	0.770
SEJ00193.1	SEJ23895.1	SAMN04487917_103283	SAMN04487917_104363	3-hydroxyisobutyrate dehydrogenase.	3-methylcrotonyl-CoA carboxylase beta subunit.	0.774
SEJ00193.1	SEJ23919.1	SAMN04487917_103283	SAMN04487917_104364	3-hydroxyisobutyrate dehydrogenase.	acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein.	0.770
SEJ00193.1	SEJ39615.1	SAMN04487917_103283	SAMN04487917_105311	3-hydroxyisobutyrate dehydrogenase.	Hydroxypyruvate isomerase; Belongs to the hyi family.	0.758
SEJ00193.1	SEJ74759.1	SAMN04487917_103283	SAMN04487917_11214	3-hydroxyisobutyrate dehydrogenase.	Citrate synthase; Belongs to the citrate synthase family.	0.812
SEJ00193.1	SEJ80658.1	SAMN04487917_103283	SAMN04487917_11475	3-hydroxyisobutyrate dehydrogenase.	Methylmalonate-semialdehyde dehydrogenase [acylating].	0.767
SEJ00193.1	SEJ82902.1	SAMN04487917_103283	SAMN04487917_1187	3-hydroxyisobutyrate dehydrogenase.	Methylmalonate-semialdehyde dehydrogenase [acylating].	0.767