STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ47320.1Cupin superfamily protein. (388 aa)    
Predicted Functional Partners:
SEJ47296.1
Hypothetical protein.
 
     0.951
rplP
LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.873
SEJ47341.1
Hypothetical protein.
       0.720
SEJ21949.1
Acetyl esterase/lipase.
  
     0.492
SEJ47361.1
Ribosomal protein S18 acetylase RimI.
       0.416
SEJ47386.1
Predicted O-methyltransferase YrrM.
       0.416
SEJ47274.1
Hypothetical protein.
       0.409
Your Current Organism:
Arthrobacter sp. yr096
NCBI taxonomy Id: 1761750
Other names: A. sp. yr096
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.