Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIT67072.1 | SIT67684.1 | SAMN04487768_1051 | SAMN04487768_1235 | Cell wall-associated hydrolase, NlpC family. | Membrane-bound lytic murein transglycosylase D. | 0.650 |
SIT67072.1 | SIT74280.1 | SAMN04487768_1051 | SAMN04487768_2981 | Cell wall-associated hydrolase, NlpC family. | D-alanyl-D-alanine endopeptidase (penicillin-binding protein 7); Belongs to the peptidase S11 family. | 0.505 |
SIT67072.1 | ftsI | SAMN04487768_1051 | SAMN04487768_1691 | Cell wall-associated hydrolase, NlpC family. | Cell division protein FtsI (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum. | 0.428 |
SIT67072.1 | ftsI-2 | SAMN04487768_1051 | SAMN04487768_2301 | Cell wall-associated hydrolase, NlpC family. | Cell division protein FtsI (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum. | 0.428 |
SIT67072.1 | mrdA | SAMN04487768_1051 | SAMN04487768_2194 | Cell wall-associated hydrolase, NlpC family. | Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. | 0.474 |
SIT67684.1 | SIT67072.1 | SAMN04487768_1235 | SAMN04487768_1051 | Membrane-bound lytic murein transglycosylase D. | Cell wall-associated hydrolase, NlpC family. | 0.650 |
SIT67684.1 | SIT72743.1 | SAMN04487768_1235 | SAMN04487768_2605 | Membrane-bound lytic murein transglycosylase D. | Hypothetical protein. | 0.670 |
SIT67684.1 | SIT74280.1 | SAMN04487768_1235 | SAMN04487768_2981 | Membrane-bound lytic murein transglycosylase D. | D-alanyl-D-alanine endopeptidase (penicillin-binding protein 7); Belongs to the peptidase S11 family. | 0.741 |
SIT67684.1 | SIT74931.1 | SAMN04487768_1235 | SAMN04487768_3101 | Membrane-bound lytic murein transglycosylase D. | Murein tetrapeptidase LD-carboxypeptidase. Serine peptidase. MEROPS family S66. | 0.702 |
SIT67684.1 | ftsI | SAMN04487768_1235 | SAMN04487768_1691 | Membrane-bound lytic murein transglycosylase D. | Cell division protein FtsI (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum. | 0.585 |
SIT67684.1 | ftsI-2 | SAMN04487768_1235 | SAMN04487768_2301 | Membrane-bound lytic murein transglycosylase D. | Cell division protein FtsI (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum. | 0.585 |
SIT67684.1 | ftsW | SAMN04487768_1235 | SAMN04487768_1686 | Membrane-bound lytic murein transglycosylase D. | Cell division protein FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily. | 0.515 |
SIT67684.1 | mrdA | SAMN04487768_1235 | SAMN04487768_2194 | Membrane-bound lytic murein transglycosylase D. | Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. | 0.585 |
SIT67684.1 | mrdB | SAMN04487768_1235 | SAMN04487768_2193 | Membrane-bound lytic murein transglycosylase D. | Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.432 |
SIT67684.1 | murF | SAMN04487768_1235 | SAMN04487768_1689 | Membrane-bound lytic murein transglycosylase D. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.503 |
SIT72743.1 | SIT67684.1 | SAMN04487768_2605 | SAMN04487768_1235 | Hypothetical protein. | Membrane-bound lytic murein transglycosylase D. | 0.670 |
SIT72743.1 | SIT74280.1 | SAMN04487768_2605 | SAMN04487768_2981 | Hypothetical protein. | D-alanyl-D-alanine endopeptidase (penicillin-binding protein 7); Belongs to the peptidase S11 family. | 0.511 |
SIT72743.1 | ftsI | SAMN04487768_2605 | SAMN04487768_1691 | Hypothetical protein. | Cell division protein FtsI (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum. | 0.456 |
SIT72743.1 | ftsI-2 | SAMN04487768_2605 | SAMN04487768_2301 | Hypothetical protein. | Cell division protein FtsI (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum. | 0.456 |
SIT72743.1 | mrdA | SAMN04487768_2605 | SAMN04487768_2194 | Hypothetical protein. | Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. | 0.629 |
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