STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ64103.1Agmatine deiminase; Belongs to the agmatine deiminase family. (382 aa)    
Predicted Functional Partners:
SDQ64074.1
Amidase.
 
  
  0.933
SDQ96878.1
Predicted amidohydrolase.
 
 
 0.883
SDQ64123.1
Transcriptional regulator, TetR family.
 
     0.715
SDQ64046.1
Glutamate or tyrosine decarboxylase.
 
   
 0.666
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.632
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.569
SDQ14564.1
Predicted amidohydrolase.
  
 
 0.524
SDQ45855.1
Spermidine synthase.
    
 0.483
SDQ81514.1
Arginase; Belongs to the arginase family.
     
 0.475
SDQ64623.1
Peptide/nickel transport system substrate-binding protein.
  
  
  0.429
Your Current Organism:
Microbacterium sp. cf332
NCBI taxonomy Id: 1761804
Other names: M. sp. cf332
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.