STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ74708.1Cysteine desulfuration protein SufE. (148 aa)    
Predicted Functional Partners:
SDJ74665.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 0.997
SDJ74631.1
Fe-S cluster assembly protein SufD.
 
 
 0.959
SDJ74595.1
Fe-S cluster assembly ATP-binding protein.
 
   0.936
SDK52323.1
Selenocysteine lyase/Cysteine desulfurase.
  
 0.934
SDJ74556.1
Fe-S cluster assembly protein SufB.
 
 
 0.931
SDJ74753.1
FeS assembly SUF system protein.
       0.853
SDJ74791.1
Transcriptional regulator, BadM/Rrf2 family.
     
 0.810
SDL61321.1
Nitrogen fixation protein NifU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
    
 0.638
SDJ92092.1
Cysteine desulfurase.
   
 0.606
SDL04607.1
Adenylyltransferase and sulfurtransferase.
   
 
 0.606
Your Current Organism:
Pedobacter sp. ok626
NCBI taxonomy Id: 1761882
Other names: P. sp. ok626
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.