STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ94572.1L-alanine-DL-glutamate epimerase. (365 aa)    
Predicted Functional Partners:
SDJ94626.1
Hypothetical protein.
       0.708
SDL74311.1
Tagaturonate reductase; Belongs to the mannitol dehydrogenase family.
    
 0.471
SDL44914.1
L-alanine-DL-glutamate epimerase.
  
  
 
0.465
SDL24743.1
L-alanine-DL-glutamate epimerase.
  
  
 
0.461
SDK82388.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.449
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 
  0.445
SDJ35079.1
L-fuconolactonase.
    
 0.445
SDJ72827.1
Non-heme chloroperoxidase.
     
 0.443
SDK32858.1
Pimeloyl-ACP methyl ester carboxylesterase.
     
 0.443
SDK57662.1
Pimeloyl-ACP methyl ester carboxylesterase.
     
 0.443
Your Current Organism:
Pedobacter sp. ok626
NCBI taxonomy Id: 1761882
Other names: P. sp. ok626
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