SDJ96898.1 protein (Pedobacter sp. ok626) - STRING interaction network

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Score

SDJ96898.1

ATPase components of ABC transporters with duplicated ATPase domains. (566 aa)

Predicted Functional Partners:

rpsM

0.825

rplT

0.823

rplU

0.813

rpsO

0.811

rplD

0.809

rpsC

0.808

rplM

0.806

rplC

0.804

rpmH

0.803

rplR

0.802

Your Current Organism:

Pedobacter sp. ok626

NCBI taxonomy Id: 1761882
Other names: P. sp. ok626

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDJ96898.1	rplC	SAMN04487898_105178	SAMN04487898_10265	ATPase components of ABC transporters with duplicated ATPase domains.	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.804
SDJ96898.1	rplD	SAMN04487898_105178	SAMN04487898_10264	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	0.809
SDJ96898.1	rplM	SAMN04487898_105178	SAMN04487898_11928	ATPase components of ABC transporters with duplicated ATPase domains.	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.806
SDJ96898.1	rplR	SAMN04487898_105178	SAMN04487898_10249	ATPase components of ABC transporters with duplicated ATPase domains.	Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.802
SDJ96898.1	rplT	SAMN04487898_105178	SAMN04487898_113163	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.823
SDJ96898.1	rplU	SAMN04487898_105178	SAMN04487898_10616	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.813
SDJ96898.1	rpmH	SAMN04487898_105178	SAMN04487898_12171	ATPase components of ABC transporters with duplicated ATPase domains.	Large subunit ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.803
SDJ96898.1	rpsC	SAMN04487898_105178	SAMN04487898_10259	ATPase components of ABC transporters with duplicated ATPase domains.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.808
SDJ96898.1	rpsM	SAMN04487898_105178	SAMN04487898_10242	ATPase components of ABC transporters with duplicated ATPase domains.	SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.	0.825
SDJ96898.1	rpsO	SAMN04487898_105178	SAMN04487898_11387	ATPase components of ABC transporters with duplicated ATPase domains.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.811
rplC	SDJ96898.1	SAMN04487898_10265	SAMN04487898_105178	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ATPase components of ABC transporters with duplicated ATPase domains.	0.804
rplC	rplD	SAMN04487898_10265	SAMN04487898_10264	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	SAMN04487898_10265	SAMN04487898_11928	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplR	SAMN04487898_10265	SAMN04487898_10249	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplC	rplT	SAMN04487898_10265	SAMN04487898_113163	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
rplC	rplU	SAMN04487898_10265	SAMN04487898_10616	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
rplC	rpmH	SAMN04487898_10265	SAMN04487898_12171	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.999
rplC	rpsC	SAMN04487898_10265	SAMN04487898_10259	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsM	SAMN04487898_10265	SAMN04487898_10242	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.	0.999
rplC	rpsO	SAMN04487898_10265	SAMN04487898_11387	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999