STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK66632.1Starch-binding associating with outer membrane. (520 aa)    
Predicted Functional Partners:
SDK66591.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.940
SDL34043.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.779
SDK66667.1
Hypothetical protein.
       0.773
SDL01883.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.773
SDL42051.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.772
SDJ90320.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.770
SDL59722.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.763
SDL05091.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.761
SDK93389.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.760
SDL49440.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.757
Your Current Organism:
Pedobacter sp. ok626
NCBI taxonomy Id: 1761882
Other names: P. sp. ok626
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.