STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK64267.1TonB-linked outer membrane protein, SusC/RagA family. (1169 aa)    
Predicted Functional Partners:
SDK64307.1
Starch-binding associating with outer membrane.
 
     0.933
SDJ01381.1
SusD family protein.
  
 
   0.792
SDL76377.1
Starch-binding associating with outer membrane.
  
 
   0.791
SDL49393.1
Starch-binding associating with outer membrane.
  
 
   0.788
SDJ90282.1
Starch-binding associating with outer membrane.
  
 
   0.786
SDL59764.1
SusD family protein.
  
 
   0.786
SDJ05974.1
Starch-binding associating with outer membrane.
  
 
   0.785
SDL05127.1
Starch-binding associating with outer membrane.
  
 
   0.784
SDK65736.1
SusD family protein.
  
 
   0.783
SDJ10372.1
Starch-binding associating with outer membrane.
  
 
   0.782
Your Current Organism:
Pedobacter sp. ok626
NCBI taxonomy Id: 1761882
Other names: P. sp. ok626
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.