STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL33108.1Glycosyltransferase involved in cell wall bisynthesis. (371 aa)    
Predicted Functional Partners:
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
       0.768
SDL33218.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
    
  0.717
comB
2-phosphosulfolactate phosphatase; Belongs to the ComB family.
  
    0.706
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
    0.690
SDL33176.1
Peptide/nickel transport system permease protein.
     
 0.650
SDL97331.1
Trehalose 6-phosphate synthase/phosphatase.
  
 0.626
SDL33250.1
Hypothetical protein.
  
    0.624
SDJ82763.1
Hypothetical protein.
    
   0.591
SDK15303.1
Hypothetical protein.
    
   0.591
SDJ25368.1
1,4-alpha-glucan branching enzyme.
   
  0.511
Your Current Organism:
Pedobacter sp. ok626
NCBI taxonomy Id: 1761882
Other names: P. sp. ok626
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.