STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL51860.1Biopolymer transport protein ExbB. (236 aa)    
Predicted Functional Partners:
SDL51809.1
Biopolymer transport protein ExbD.
 
 0.993
SDL51770.1
Hypothetical protein.
 
 0.972
SDJ14324.1
Biopolymer transport protein ExbD.
  
 0.914
SDJ37853.1
Outer membrane transport energization protein ExbD.
  
 0.914
SDJ37892.1
Biopolymer transport protein ExbD/TolR.
  
 0.914
SDL51946.1
TonB dependent receptor.
 
 
 0.889
SDL51990.1
Tetratricopeptide repeat-containing protein.
 
  
 0.877
SDK55852.1
Hypothetical protein.
  
 0.872
SDL57825.1
Hypothetical protein.
  
 0.872
SDL51905.1
Sporulation related domain-containing protein.
       0.853
Your Current Organism:
Pedobacter sp. ok626
NCBI taxonomy Id: 1761882
Other names: P. sp. ok626
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.