STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL67690.1Bacteroides conjugative transposon TraJ protein. (401 aa)    
Predicted Functional Partners:
SDL67650.1
Bacteroides conjugative transposon TraK protein.
 
  
 0.969
SDL67733.1
Hypothetical protein.
 
   
 0.965
SDL67767.1
Hypothetical protein.
 
     0.964
SDL67578.1
Bacteroides conjugative transposon TraM protein.
 
   
 0.948
SDL67541.1
Hypothetical protein.
 
     0.922
SDL67501.1
Hypothetical protein.
 
     0.916
SDL67934.1
Bacteroides conjugation system ATPase, TraG family.
 
   
 0.856
SDL67858.1
Hypothetical protein.
 
     0.853
SDL67970.1
Protein of unknown function.
 
     0.812
SDL67605.1
Hypothetical protein.
       0.801
Your Current Organism:
Pedobacter sp. ok626
NCBI taxonomy Id: 1761882
Other names: P. sp. ok626
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.