STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL87358.1FecR family protein. (405 aa)    
Predicted Functional Partners:
SDJ13304.1
FecR family protein.
  
     0.745
SDL05057.1
FecR family protein.
  
     0.733
SDL29708.1
Secretin and TonB N terminus short domain-containing protein.
  
    0.698
SDJ58123.1
FecR family protein.
  
     0.677
SDL35819.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.605
SDL86978.1
Starch-binding associating with outer membrane.
 
     0.592
SDL87393.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.583
SDL87294.1
SusD family protein.
 
     0.562
SDL87009.1
TonB-linked outer membrane protein, SusC/RagA family.
 
    0.559
SDL87083.1
RNA polymerase sigma factor, sigma-70 family.
 
   0.538
Your Current Organism:
Pedobacter sp. ok626
NCBI taxonomy Id: 1761882
Other names: P. sp. ok626
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.