STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE49893.1HlyD family secretion protein. (369 aa)    
Predicted Functional Partners:
SEE49856.1
Putative ABC transport system permease protein.
 
 0.988
SEE49875.1
Putative ABC transport system permease protein.
 
 0.988
SEE49835.1
Putative ABC transport system ATP-binding protein.
 
  0.977
SEE49907.1
Outer membrane protein.
 
  0.974
SEE51108.1
Hydrophobic/amphiphilic exporter-1, HAE1 family.
  
  0.833
SEE61871.1
Multidrug efflux pump subunit AcrB.
   
  0.799
SEE61886.1
Multidrug efflux pump subunit AcrB.
   
  0.799
SEE58358.1
Putative ABC transport system ATP-binding protein.
  
  0.767
SEE58459.1
Outer membrane protein.
 
  0.756
SEE45044.1
Lipoprotein-releasing system ATP-binding protein.
 
  0.748
Your Current Organism:
Prevotella sp. lc2012
NCBI taxonomy Id: 1761886
Other names: P. sp. lc2012
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.