STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM65048.1Uncharacterized membrane protein. (305 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.852
SEM65092.1
Protein of unknown function.
       0.693
SEM97838.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.571
SEM64128.1
Protein of unknown function.
  
     0.556
SEM98031.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.523
SEM89658.1
WD40-like Beta Propeller Repeat.
  
     0.520
SEN26422.1
WD40-like Beta Propeller Repeat.
  
     0.516
SEM89597.1
WD40-like Beta Propeller Repeat.
  
     0.511
SEM65115.1
Flavodoxin.
       0.489
SEM89685.1
WD40-like Beta Propeller Repeat.
  
     0.483
Your Current Organism:
Prevotella sp. ne3005
NCBI taxonomy Id: 1761887
Other names: P. sp. ne3005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.