STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA42535.1Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose). (115 aa)    
Predicted Functional Partners:
SEA79389.1
Chromosome segregation ATPase.
  
     0.720
SEA18374.1
Protein of unknown function.
  
     0.695
SEA29496.1
Hypothetical protein.
  
     0.694
SEA03369.1
Trypsin-like peptidase domain-containing protein.
 
     0.690
SEA58358.1
PAP2 superfamily protein.
 
     0.689
SEA19984.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
     0.683
argR
Transcriptional regulator, ArgR family; Regulates arginine biosynthesis genes.
       0.666
SEA89768.1
Hypothetical protein.
  
     0.660
SDZ90043.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
  
     0.640
SEA28656.1
Peptidyl-prolyl cis-trans isomerase D.
 
     0.630
Your Current Organism:
Prevotella sp. tc228
NCBI taxonomy Id: 1761888
Other names: P. sp. tc2-28, Prevotella sp. tc2-28
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