STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA59964.1Muramoyltetrapeptide carboxypeptidase. (73 aa)    
Predicted Functional Partners:
SEA21601.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.699
SEA10376.1
Sporulation related domain-containing protein.
 
  
  0.622
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
    
 0.587
SDZ93621.1
D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4).
    
 0.568
SEA59935.1
Hypothetical protein.
       0.555
SEA75161.1
N-acetylmuramoyl-L-alanine amidase.
     
 0.539
SEA92142.1
N-acetylmuramoyl-L-alanine amidase.
     
 0.539
SEA28609.1
LPS export ABC transporter protein LptC.
    
  0.537
SEA28504.1
Protein of unknown function.
    
  0.534
SEA25916.1
Hypothetical protein.
     
 0.529
Your Current Organism:
Prevotella sp. tc228
NCBI taxonomy Id: 1761888
Other names: P. sp. tc2-28, Prevotella sp. tc2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.