STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM94627.1Pilus assembly protein CpaF. (445 aa)    
Predicted Functional Partners:
SDM94602.1
Tight adherence protein B.
 
  
 0.990
SDM94568.1
Tight adherence protein C.
 
  
 0.989
SDM94707.1
Pilus assembly protein CpaE.
 
  
 0.981
SDM94731.1
Pilus assembly protein CpaB.
 
  
 0.963
SDM94649.1
TadE-like protein.
  
  
 0.952
SDM94679.1
TadE-like protein.
 
  
 0.937
SDM94755.1
Hypothetical protein.
       0.784
SDO53035.1
Helicase/secretion neighborhood CpaE-like protein.
  
  
 0.780
SDM94549.1
Signal transduction histidine kinase.
       0.773
SDO52937.1
Type II secretion system (T2SS), protein F.
  
  
 0.739
Your Current Organism:
Streptomyces sp. cf386
NCBI taxonomy Id: 1761904
Other names: S. sp. cf386
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.