SDO03462.1 protein (Streptomyces sp. cf386) - STRING interaction network

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Score

SDO03462.1

Cold-shock DNA-binding protein family. (67 aa)

Predicted Functional Partners:

rpsL

0.851

rplO

0.834

rplQ

0.768

rplV

0.759

rpsB

0.758

rplT

0.747

rpsQ

0.745

rpmA

0.744

rpsE

0.743

rplC

0.740

Your Current Organism:

Streptomyces sp. cf386

NCBI taxonomy Id: 1761904
Other names: S. sp. cf386

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDO03462.1	rplC	SAMN04487981_10821	SAMN04487981_103406	Cold-shock DNA-binding protein family.	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.740
SDO03462.1	rplO	SAMN04487981_10821	SAMN04487981_103387	Cold-shock DNA-binding protein family.	LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.834
SDO03462.1	rplQ	SAMN04487981_10821	SAMN04487981_103379	Cold-shock DNA-binding protein family.	LSU ribosomal protein L17P.	0.768
SDO03462.1	rplT	SAMN04487981_10821	SAMN04487981_112245	Cold-shock DNA-binding protein family.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.747
SDO03462.1	rplV	SAMN04487981_10821	SAMN04487981_103401	Cold-shock DNA-binding protein family.	LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.759
SDO03462.1	rpmA	SAMN04487981_10821	SAMN04487981_1149	Cold-shock DNA-binding protein family.	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.744
SDO03462.1	rpsB	SAMN04487981_10821	SAMN04487981_117129	Cold-shock DNA-binding protein family.	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.758
SDO03462.1	rpsE	SAMN04487981_10821	SAMN04487981_103389	Cold-shock DNA-binding protein family.	SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.743
SDO03462.1	rpsL	SAMN04487981_10821	SAMN04487981_103430	Cold-shock DNA-binding protein family.	SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.851
SDO03462.1	rpsQ	SAMN04487981_10821	SAMN04487981_103397	Cold-shock DNA-binding protein family.	SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.745
rplC	SDO03462.1	SAMN04487981_103406	SAMN04487981_10821	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Cold-shock DNA-binding protein family.	0.740
rplC	rplO	SAMN04487981_103406	SAMN04487981_103387	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.999
rplC	rplQ	SAMN04487981_103406	SAMN04487981_103379	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L17P.	0.999
rplC	rplT	SAMN04487981_103406	SAMN04487981_112245	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
rplC	rplV	SAMN04487981_103406	SAMN04487981_103401	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rplC	rpmA	SAMN04487981_103406	SAMN04487981_1149	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.999
rplC	rpsB	SAMN04487981_103406	SAMN04487981_117129	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.999
rplC	rpsE	SAMN04487981_103406	SAMN04487981_103389	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.999
rplC	rpsL	SAMN04487981_103406	SAMN04487981_103430	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.999
rplC	rpsQ	SAMN04487981_103406	SAMN04487981_103397	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.999