SDP63713.1 protein (Streptomyces sp. cf386) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDP63713.1

ABC-type glycerol-3-phosphate transport system, substrate-binding protein. (436 aa)

Predicted Functional Partners:

SDP63672.1

0.996

SDP63691.1

0.994

SDP48817.1

0.949

SDM66352.1

0.930

SDP08135.1

0.883

SDO42591.1

0.871

SDO42656.1

0.871

SDP63727.1

0.852

SDP63989.1

0.804

SDN69562.1

0.797

Your Current Organism:

Streptomyces sp. cf386

NCBI taxonomy Id: 1761904
Other names: S. sp. cf386

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDM66352.1	SDN69562.1	SAMN04487981_102177	SAMN04487981_106218	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-).	0.989
SDM66352.1	SDP08135.1	SAMN04487981_102177	SAMN04487981_116141	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Raffinose/stachyose/melibiose transport system substrate-binding protein.	0.851
SDM66352.1	SDP48817.1	SAMN04487981_102177	SAMN04487981_12440	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.901
SDM66352.1	SDP63672.1	SAMN04487981_102177	SAMN04487981_13021	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Multiple sugar transport system permease protein.	0.967
SDM66352.1	SDP63691.1	SAMN04487981_102177	SAMN04487981_13022	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Multiple sugar transport system permease protein.	0.940
SDM66352.1	SDP63713.1	SAMN04487981_102177	SAMN04487981_13023	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC-type glycerol-3-phosphate transport system, substrate-binding protein.	0.930
SDM66352.1	SDP63989.1	SAMN04487981_102177	SAMN04487981_13038	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	N-acetylglucosamine transport system permease protein.	0.932
SDN69562.1	SDM66352.1	SAMN04487981_106218	SAMN04487981_102177	Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-).	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.989
SDN69562.1	SDO42591.1	SAMN04487981_106218	SAMN04487981_110326	Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-).	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.953
SDN69562.1	SDO42656.1	SAMN04487981_106218	SAMN04487981_110328	Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-).	ABC-type sugar transport system, ATPase component; Belongs to the ABC transporter superfamily.	0.956
SDN69562.1	SDP08135.1	SAMN04487981_106218	SAMN04487981_116141	Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-).	Raffinose/stachyose/melibiose transport system substrate-binding protein.	0.655
SDN69562.1	SDP48817.1	SAMN04487981_106218	SAMN04487981_12440	Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-).	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.985
SDN69562.1	SDP63672.1	SAMN04487981_106218	SAMN04487981_13021	Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-).	Multiple sugar transport system permease protein.	0.773
SDN69562.1	SDP63691.1	SAMN04487981_106218	SAMN04487981_13022	Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-).	Multiple sugar transport system permease protein.	0.908
SDN69562.1	SDP63713.1	SAMN04487981_106218	SAMN04487981_13023	Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-).	ABC-type glycerol-3-phosphate transport system, substrate-binding protein.	0.797
SDN69562.1	SDP63989.1	SAMN04487981_106218	SAMN04487981_13038	Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-).	N-acetylglucosamine transport system permease protein.	0.463
SDO42591.1	SDN69562.1	SAMN04487981_110326	SAMN04487981_106218	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-).	0.953
SDO42591.1	SDO42656.1	SAMN04487981_110326	SAMN04487981_110328	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC-type sugar transport system, ATPase component; Belongs to the ABC transporter superfamily.	0.914
SDO42591.1	SDP08135.1	SAMN04487981_110326	SAMN04487981_116141	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Raffinose/stachyose/melibiose transport system substrate-binding protein.	0.851
SDO42591.1	SDP48817.1	SAMN04487981_110326	SAMN04487981_12440	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.778