Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SERP0200Conserved hypothetical protein; Identified by similarity to EGAD:45955; similarity to GP:12543558. (434 aa)    
Predicted Functional Partners:
SERP0201
3-oxoacyl-(acyl-carrier-protein) reductase, putative; Identified by similarity to EGAD:108288; match to protein family HMM PF00106; match to protein family HMM PF00678.
 
   
 0.857
SERP2338
Peptide synthetase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746; Belongs to the ATP-dependent AMP-binding enzyme family.
 
   
 0.703
SERP0325
Flavohemoprotein, putative; Identified by match to protein family HMM PF00042; match to protein family HMM PF00970; Belongs to the globin family.
 
   
 0.618
azo1
Azoreductase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADPH, but not NADH, as an electron donor for its activity (By similarity).
  
 
 0.534
SERP2330
Thiamine biosynthesis protein, putative; Identified by similarity to EGAD:28994.
  
  
 0.410
SERP2269
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA2547.
 
  
 0.402
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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