STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
azo1Azoreductase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADPH, but not NADH, as an electron donor for its activity (By similarity). (188 aa)    
Predicted Functional Partners:
SERP0205
Hydrolase, haloacid dehalogenase-like family; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01483; match to protein family HMM TIGR01484.
       0.883
tadA
Cytidine/deoxycytidylate deaminase family protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.796
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
      
 0.761
def-2
Polypeptide deformylase; Identified by similarity to EGAD:98915; match to protein family HMM PF01327; Belongs to the polypeptide deformylase family.
     
 0.761
folE2
Conserved hypothetical protein TIGR00294; Converts GTP to 7,8-dihydroneopterin triphosphate.
      
 0.755
SERP0202
Identified by match to protein family HMM PF01712.
       0.753
SERP0203
Identified by match to protein family HMM PF01712.
       0.753
SERP2381
NADH:flavin oxidoreductase/fumarate reductase, flavoprotein subunit, putative; Identified by similarity to EGAD:16535; match to protein family HMM PF00724; match to protein family HMM PF00890; match to protein family HMM PF04205; match to protein family HMM TIGR01813.
     
 0.735
SERP0200
Conserved hypothetical protein; Identified by similarity to EGAD:45955; similarity to GP:12543558.
  
 
 0.586
SERP2330
Thiamine biosynthesis protein, putative; Identified by similarity to EGAD:28994.
  
  
 0.496
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.