Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SERP0254 | SERP0255 | SERP0254 | SERP0255 | AIR carboxylase, putative. | Identified by similarity to EGAD:49939; match to protein family HMM TIGR00268. | 0.988 |
SERP0254 | SERP0256 | SERP0254 | SERP0256 | AIR carboxylase, putative. | Conserved domain protein. | 0.984 |
SERP0254 | larC | SERP0254 | SERP0253 | AIR carboxylase, putative. | Conserved hypothetical protein TIGR00299; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family. | 0.987 |
SERP0255 | SERP0254 | SERP0255 | SERP0254 | Identified by similarity to EGAD:49939; match to protein family HMM TIGR00268. | AIR carboxylase, putative. | 0.988 |
SERP0255 | SERP0256 | SERP0255 | SERP0256 | Identified by similarity to EGAD:49939; match to protein family HMM TIGR00268. | Conserved domain protein. | 0.985 |
SERP0255 | larC | SERP0255 | SERP0253 | Identified by similarity to EGAD:49939; match to protein family HMM TIGR00268. | Conserved hypothetical protein TIGR00299; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family. | 0.988 |
SERP0256 | SERP0254 | SERP0256 | SERP0254 | Conserved domain protein. | AIR carboxylase, putative. | 0.984 |
SERP0256 | SERP0255 | SERP0256 | SERP0255 | Conserved domain protein. | Identified by similarity to EGAD:49939; match to protein family HMM TIGR00268. | 0.985 |
SERP0256 | larC | SERP0256 | SERP0253 | Conserved domain protein. | Conserved hypothetical protein TIGR00299; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family. | 0.982 |
larC | SERP0254 | SERP0253 | SERP0254 | Conserved hypothetical protein TIGR00299; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family. | AIR carboxylase, putative. | 0.987 |
larC | SERP0255 | SERP0253 | SERP0255 | Conserved hypothetical protein TIGR00299; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family. | Identified by similarity to EGAD:49939; match to protein family HMM TIGR00268. | 0.988 |
larC | SERP0256 | SERP0253 | SERP0256 | Conserved hypothetical protein TIGR00299; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family. | Conserved domain protein. | 0.982 |