STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP0269Hydrolase, alpha/beta hydrolase fold family; Identified by match to protein family HMM PF00561. (265 aa)    
Predicted Functional Partners:
SERP0268
Hydrolase, haloacid dehalogenase-like family; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.
  
 0.957
SERP0267
Iron compound ABC transporter, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.846
argS
arginyl-tRNA synthetase; Identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456.
      0.820
SERP0270
Conserved hypothetical protein; Identified by similarity to OMNI:SA0669.
       0.788
SERP0266
Iron compound ABC transporter, iron compound-binding protein, putative; Identified by match to protein family HMM PF01497.
       0.747
SERP0272
Conserved hypothetical protein; Identified by similarity to OMNI:SA0670.
       0.732
SERP2338
Peptide synthetase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.724
SERP1866
acyl-CoA dehydrogenase-related protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 0.658
SERP0251
HD domain protein; Identified by match to protein family HMM PF01966.
 
    0.611
SERP0261
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0583.
       0.588
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.