Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
sirRIron-dependent repressor; Identified by similarity to GP:1617434; match to protein family HMM PF01325; match to protein family HMM PF02742. (214 aa)    
Predicted Functional Partners:
sitB
ABC transporter, permease protein; Identified by match to protein family HMM PF00950.
 
  
 0.974
sitA
ABC transporter, ATP-binding protein; Identified by similarity to GP:1617428; match to protein family HMM PF00005.
 
  
 0.974
sitC
ABC transporter, substrate-binding protein; Identified by similarity to GP:1617430; match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.965
SERP1407
Conserved hypothetical protein; Identified by similarity to OMNI:SA1927; match to protein family HMM PF04307.
      
 0.760
SERP1771
Conserved hypothetical protein; Identified by match to protein family HMM PF04307.
      
 0.760
mntH
Mn2+/Fe2+ transporter, NRAMP family; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
 
  
 0.725
fur
Transcriptional regulator, Fur family; Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes.
  
  
 0.644
tpx
Thiol peroxidase, putative; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily.
  
  
 0.519
SERP0438
Identified by match to protein family HMM TIGR01777; Belongs to the NAD(P)-dependent epimerase/dehydratase family. SDR39U1 subfamily.
   
    0.477
metN1
ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
   
   0.410
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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