Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SERP0318LysM domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF05257. (266 aa)    
Predicted Functional Partners:
SERP1650
Prophage, amidase, putative; Identified by match to protein family HMM PF01520; match to protein family HMM PF05257.
     
 0.776
SERP1330
N-acetylmuramoyl-L-alanine amidase, family 4; Identified by match to protein family HMM PF01832.
   
  
 0.769
SERP0043
Lysozyme domain protein.
     
 0.550
SERP2263
N-acetylmuramoyl-L-alanine amidase domain protein; Identified by match to protein family HMM PF01832; match to protein family HMM PF05257.
 
   
0.540
sepA
Extracellular elastase precursor; Extracellular zinc metalloprotease.
  
 
 
 0.463
SERP0422
LysM domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF05257.
 
   
0.430
nrdD
Anaerobic ribonucleoside-triphosphate reductase; Identified by match to protein family HMM PF01228.
     
 0.405
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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