STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP0318LysM domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF05257. (266 aa)    
Predicted Functional Partners:
SERP1650
Prophage, amidase, putative; Identified by match to protein family HMM PF01520; match to protein family HMM PF05257.
      
 0.716
SERP1330
N-acetylmuramoyl-L-alanine amidase, family 4; Identified by match to protein family HMM PF01832.
   
  
 0.698
SERP2263
N-acetylmuramoyl-L-alanine amidase domain protein; Identified by match to protein family HMM PF01832; match to protein family HMM PF05257.
 
   
0.550
sepA
Extracellular elastase precursor; Extracellular zinc metalloprotease.
  
 
 
 0.496
SERP0043
Lysozyme domain protein.
     
 0.490
SERP1640
M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01551; match to protein family HMM TIGR01760.
  
  
 0.474
SERP0439
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.451
SERP0093
Conserved hypothetical protein; Identified by similarity to EGAD:162731.
   
 
 0.438
SERP0422
LysM domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF05257.
 
   
0.429
atlE
Bifunctional autolysin; Endohydrolysis of the di-N-acetylchitobiosyl unit in high- mannose glycopeptides and glycoproteins containing the -[(Man)5(GlcNAc)2]-Asn structure. One N-acetyl-D-glucosamine residue remains attached to the protein; the rest of the oligosaccharide is released intact. Cleaves the peptidoglycan connecting the daughter cells at the end of the cell division cycle, resulting in the separation of the two newly divided cells. Acts as an autolysin in penicillin-induced lysis (By similarity); In the C-terminal section; belongs to the glycosyl hydrolase 73 family.
  
  
 0.404
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.