Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SERP0385ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (324 aa)    
Predicted Functional Partners:
SERP0386
ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.
 
 0.999
SERP2029
Amino acid ABC transporter, amino acid-binding protein; Identified by similarity to EGAD:109190; match to protein family HMM PF04069.
 
 0.976
SERP2356
Amino acid ABC transporter, amino acid-binding protein; Identified by similarity to EGAD:109208; match to protein family HMM PF04069.
 
 0.976
SERP2357
Amino acid ABC transporter, permease protein; Identified by similarity to EGAD:109210; match to protein family HMM PF00528.
 
 0.976
SERP2028
Amino acid ABC transporter, permease protein; Identified by similarity to EGAD:109206; match to protein family HMM PF00528.
 
 0.975
SERP2030
Amino acid ABC transporter, permease protein; Identified by similarity to EGAD:109210; match to protein family HMM PF00528.
 
 0.975
SERP2355
Amino acid ABC transporter, permease protein; Identified by similarity to EGAD:109206; match to protein family HMM PF00528.
 
 0.975
SERP2031
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to EGAD:109212; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.
  
  
 
0.908
SERP2358
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to EGAD:109212; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.
  
  
 
0.908
SERP0383
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
   
0.713
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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