STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP0395Membrane protein, putative; Identified by match to protein family HMM PF00892. (291 aa)    
Predicted Functional Partners:
queF
Conserved hypothetical protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.
       0.879
SERP0392
Di-tripeptide transporter, putative; Identified by similarity to EGAD:9223; match to protein family HMM PF00854; match to protein family HMM TIGR00924.
  
   0.610
SERP0590
Na+/H+ exchanger family protein, putative; Identified by match to protein family HMM PF00999; match to protein family HMM PF02080; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
  
 0.577
SERP0157
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
   
 0.540
SERP0308
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0630.
  
     0.481
SERP0389
Alcohol dehydrogenase, iron-containing; Identified by similarity to SP:P17547; match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.476
SERP0247
Transcriptional regulator, putative.
  
   
 0.468
SERP2079
Conserved hypothetical protein; Identified by similarity to OMNI:SA2528.
  
     0.437
SERP0393
Hypothetical protein; Identified by Glimmer2; putative.
       0.433
SERP0992
Identified by match to protein family HMM PF01569.
 
   0.413
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.