STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP0399Hypothetical protein; Identified by Glimmer2; putative. (88 aa)    
Predicted Functional Partners:
nrdF-1
Ribonucleoside-diphosphate reductase 2, beta subunit; Identified by similarity to EGAD:37758; match to protein family HMM PF00268.
       0.773
SERP0400
Iron compound ABC transporter, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.732
SERP0401
Iron compound ABC transporter, permease protein; Identified by similarity to EGAD:10563; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.732
SERP0402
Iron compound ABC transporter, ATP-binding protein; Identified by similarity to EGAD:37683; match to protein family HMM PF00005.
       0.732
SERP0403
Transferrin receptor; Identified by match to protein family HMM PF01497.
       0.529
nrdI-1
nrdI protein; Probably involved in ribonucleotide reductase function.
       0.504
nrdE
Ribonucleoside-diphosphate reductase 2, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
       0.504
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.