Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SERP0403Transferrin receptor; Identified by match to protein family HMM PF01497. (347 aa)    
Predicted Functional Partners:
SERP0402
Iron compound ABC transporter, ATP-binding protein; Identified by similarity to EGAD:37683; match to protein family HMM PF00005.
 
  
 0.990
SERP0400
Iron compound ABC transporter, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.982
SERP0401
Iron compound ABC transporter, permease protein; Identified by similarity to EGAD:10563; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.982
sitB
ABC transporter, permease protein; Identified by match to protein family HMM PF00950.
      
 0.733
sitA
ABC transporter, ATP-binding protein; Identified by similarity to GP:1617428; match to protein family HMM PF00005.
   
  
 0.701
SERP0306
Iron compound ABC transporter, ATP-binding protein; Identified by similarity to EGAD:37683; match to protein family HMM PF00005.
 
  
 0.673
nrdF-1
Ribonucleoside-diphosphate reductase 2, beta subunit; Identified by similarity to EGAD:37758; match to protein family HMM PF00268.
       0.554
SERP0399
Hypothetical protein; Identified by Glimmer2; putative.
       0.529
SERP1777
Iron compound ABC transporter, iron compound-binding protein; Identified by match to protein family HMM PF01497.
  
  
0.524
SERP1775
Iron compound ABC transporter, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.484
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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