Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SERP0484Conserved hypothetical protein; Identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; Belongs to the ArsC family. (117 aa)    
Predicted Functional Partners:
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.
  
    0.761
SERP0488
Thioredoxin, putative.
  
  
 0.665
SERP0483
Thioredoxin, putative; Identified by match to protein family HMM PF00085.
  
  
 0.617
SERP0487
Toprim domain protein; Identified by match to protein family HMM PF01751.
       0.601
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.518
SERP1072
Peptidase T-like protein; Identified by similarity to SP:P26311; match to protein family HMM PF01546; match to protein family HMM TIGR01883.
   
  
 0.432
SERP0581
Conserved hypothetical protein; Identified by similarity to OMNI:SA1006; Belongs to the UPF0413 family.
    
 
 0.411
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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