STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP0526HesB domain protein; Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family. (119 aa)    
Predicted Functional Partners:
SERP0525
Conserved hypothetical protein; Identified by similarity to OMNI:SA0942; Belongs to the UPF0349 family.
       0.867
SERP0499
NifU domain protein; Identified by match to protein family HMM PF01592.
 
  
 0.844
SERP0527
NADH dehydrogenase, putative; Identified by match to protein family HMM PF00070.
  
    0.784
SERP0528
Cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. Belongs to the peptidase M17 family.
 
  
 0.773
SERP0524
NADH dehydrogenase, putative; Identified by similarity to SP:P00393; match to protein family HMM PF00070.
  
    0.769
SERP0522
NifU domain protein; Identified by match to protein family HMM PF01106.
  
 
 0.707
SERP1186
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
 
  
 0.680
SERP1280
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
 
  
 0.663
SERP1007
Conserved hypothetical protein; Identified by similarity to OMNI:SA1466.
    
 
 0.609
dnaK
dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.554
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.