Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SERP0604Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0903; Belongs to the 2H phosphoesterase superfamily. YjcG family. (169 aa)    
Predicted Functional Partners:
SERP0603
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0902; match to protein family HMM PF00756.
 
  
 0.936
traP
RNAIII-activating protein TRAP; Contributes to virulence and biofilm formation.
  
  
 0.917
SERP0741
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
   
 0.912
SERP0523
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0826.
  
     0.767
SERP1410
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA1749.
  
     0.763
ywpF
ywpF protein; Identified by similarity to OMNI:SA2090.
  
     0.760
SERP0700
Conserved hypothetical protein; Identified by similarity to OMNI:SA1120.
  
     0.753
SERP0514
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0817; match to protein family HMM PF01934.
  
     0.733
SERP0214
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0545.
  
     0.712
SERP1212
Rod shape-determining protein MreD, putative; Identified by match to protein family HMM PF04093.
  
     0.674
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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