STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP0634Membrane protein, putative; Identified by similarity to OMNI:SA1059; match to protein family HMM PF01757. (335 aa)    
Predicted Functional Partners:
SERP0635
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
     
 0.832
SERP0633
Aminotransferase, class I; Identified by match to protein family HMM PF00155.
       0.803
SERP0618
ComK family protein.
  
     0.608
qoxD
Quinol oxidase, subunit IV; Catalyzes quinol oxidation with the concomitant reduction of oxygen to water.
  
     0.598
SERP0980
Conserved hypothetical protein; Identified by similarity to OMNI:SA1446.
  
     0.576
SERP1469
Conserved hypothetical protein; Identified by similarity to OMNI:SA1988.
  
     0.551
SERP0551
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0852.
  
     0.478
SERP1303
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA1621; Belongs to the UPF0354 family.
  
     0.454
SERP1355
Identified by match to protein family HMM PF00293.
  
     0.412
SERP1069
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
   
 0.401
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.