Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
qoxDQuinol oxidase, subunit IV; Catalyzes quinol oxidation with the concomitant reduction of oxygen to water. (96 aa)    
Predicted Functional Partners:
qoxC
Quinol oxidase, subunit III; Catalyzes quinol oxidation with the concomitant reduction of oxygen to water.
 
 0.999
qoxA
Quinol oxidase, subunit I; Catalyzes quinol oxidation with the concomitant reduction of oxygen to water.
 
 0.999
qoxB
Quinol oxidase, subunit II; Catalyzes quinol oxidation with the concomitant reduction of oxygen to water. Subunit II transfers the electrons from a quinol to the binuclear center of the catalytic subunit I (By similarity).
 
 0.999
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily.
 
 
 0.993
SERP0325
Flavohemoprotein, putative; Identified by match to protein family HMM PF00042; match to protein family HMM PF00970; Belongs to the globin family.
     
 0.758
SERP0618
ComK family protein.
  
     0.600
SERP0634
Membrane protein, putative; Identified by similarity to OMNI:SA1059; match to protein family HMM PF01757.
  
     0.598
cydA
Cytochrome d ubiquinol oxidase, subunit I; Identified by similarity to EGAD:98907; match to protein family HMM PF01654.
     
 0.594
SERP1996
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.580
SERP0708
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA1003.
  
     0.533
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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