STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydBCytochrome d ubiquinol oxidase, subunit II; Identified by similarity to GP:4514629. (338 aa)    
Predicted Functional Partners:
cydA
Cytochrome d ubiquinol oxidase, subunit I; Identified by similarity to EGAD:98907; match to protein family HMM PF01654.
 
 
 0.999
SERP0674
Potassium uptake protein TrkA; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.
  
  
 0.860
SERP0340
ABC transporter, ATP-binding protein, MsbA family; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
  
 0.853
SERP0341
ABC transporter, ATP-binding protein, MsbA family; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
  
 0.822
SERP0671
Conserved hypothetical protein; Identified by similarity to OMNI:SA1093.
       0.808
SERP0732
Succinate dehydrogenase, iron-sulfur protein; Identified by similarity to SP:P08066; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384.
  
  
 0.770
SERP0731
Succinate dehydrogenase, flavoprotein subunit; Identified by similarity to SP:P08065; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01811.
  
  
 0.751
SERP0916
Conserved hypothetical protein; Identified by similarity to OMNI:SA1380.
  
     0.741
SERP1013
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA1323.
 
     0.719
SERP0514
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0817; match to protein family HMM PF01934.
  
     0.690
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.