Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
potASpermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (364 aa)    
Predicted Functional Partners:
potB
Spermidine/putrescine ABC transporter, permease protein PotB; Identified by similarity to EGAD:24120; match to protein family HMM PF00528.
 
 0.999
potC
Spermidine/putrescine ABC transporter, permease protein PotC; Identified by similarity to EGAD:15490; match to protein family HMM PF00528.
 
 0.999
potD
Spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein; Identified by similarity to EGAD:16715; match to protein family HMM PF01547.
 
 0.999
SERP0685
Transcriptional regulator, Cro/CI family; Identified by match to protein family HMM PF01381.
 
 
 0.924
SERP0690
Conserved hypothetical protein; Identified by similarity to OMNI:SA1112.
       0.777
SERP1155
Competence protein ComEC/Rec2, putative; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
     
 0.759
abcA
ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
 
   
0.739
SERP0684
Conserved hypothetical protein; Identified by similarity to OMNI:SA1106; match to protein family HMM PF05256; Belongs to the UPF0223 family.
       0.726
SERP2369
Peptide ABC transporter, ATP-binding protein; Identified by similarity to EGAD:24096; match to protein family HMM PF00005.
 
     
0.715
SERP0951
Peptide ABC transporter, ATP-binding protein, putative; Identified by match to protein family HMM PF00005.
 
    
0.711
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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