Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SERP0724 | SERP0725 | SERP0724 | SERP0725 | Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | Bacteriocin production protein, putative; Identified by match to protein family HMM PF02674. | 0.945 |
| SERP0724 | SERP0726 | SERP0724 | SERP0726 | Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | 0.834 |
| SERP0724 | mutS2 | SERP0724 | SERP0727 | Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.603 |
| SERP0724 | trxA | SERP0724 | SERP0728 | Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | Thioredoxin; Component of the thioredoxin-thioredoxin reductase system. Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions (By similarity). | 0.746 |
| SERP0724 | uvrC | SERP0724 | SERP0729 | Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.704 |
| SERP0725 | SERP0724 | SERP0725 | SERP0724 | Bacteriocin production protein, putative; Identified by match to protein family HMM PF02674. | Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | 0.945 |
| SERP0725 | SERP0726 | SERP0725 | SERP0726 | Bacteriocin production protein, putative; Identified by match to protein family HMM PF02674. | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | 0.861 |
| SERP0725 | mutS2 | SERP0725 | SERP0727 | Bacteriocin production protein, putative; Identified by match to protein family HMM PF02674. | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.603 |
| SERP0725 | trxA | SERP0725 | SERP0728 | Bacteriocin production protein, putative; Identified by match to protein family HMM PF02674. | Thioredoxin; Component of the thioredoxin-thioredoxin reductase system. Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions (By similarity). | 0.742 |
| SERP0725 | uvrC | SERP0725 | SERP0729 | Bacteriocin production protein, putative; Identified by match to protein family HMM PF02674. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.715 |
| SERP0726 | SERP0724 | SERP0726 | SERP0724 | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | 0.834 |
| SERP0726 | SERP0725 | SERP0726 | SERP0725 | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | Bacteriocin production protein, putative; Identified by match to protein family HMM PF02674. | 0.861 |
| SERP0726 | SERP1012 | SERP0726 | SERP1012 | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | 5'-3' exonuclease, putative; Identified by match to protein family HMM PF01367; match to protein family HMM PF02739. | 0.686 |
| SERP0726 | SERP1534 | SERP0726 | SERP1534 | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | DNA ligase, ATP-dependent; Identified by match to protein family HMM PF01068. | 0.949 |
| SERP0726 | hisIE | SERP0726 | SERP2300 | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | phosphoribosyl-AMP pyrophosphatase/phosphoribosyl-ATP cyclohydrolase; Identified by similarity to EGAD:8260; match to protein family HMM PF01502; match to protein family HMM PF01503; In the C-terminal section; belongs to the PRA-PH family. | 0.727 |
| SERP0726 | metS | SERP0726 | SERP0128 | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. | 0.636 |
| SERP0726 | mutS2 | SERP0726 | SERP0727 | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.950 |
| SERP0726 | polA | SERP0726 | SERP1254 | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.801 |
| SERP0726 | trxA | SERP0726 | SERP0728 | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | Thioredoxin; Component of the thioredoxin-thioredoxin reductase system. Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions (By similarity). | 0.777 |
| SERP0726 | uvrC | SERP0726 | SERP0729 | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.781 |
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